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java.lang.Object | +--org.emboss.jemboss.Jemboss
Java interface to EMBOSS (http://www.emboss.org/) (i) standalone - with a locally installation of EMBOSS. (ii) client / server mode - download the client from a site, such as the HGMP, which runs the Jemboss server.
| Nested Class Summary | |
| (package private)  class | Jemboss.winExitExtends WindowAdapter to close window | 
| Field Summary | |
| private  javax.swing.ImageIcon | bwdArrow | 
| private  javax.swing.JButton | extend | 
| private  javax.swing.JFrame | f | 
| private  javax.swing.ImageIcon | fwdArrow | 
| private static java.awt.Dimension | jdimJemboss window dimension | 
| private static java.awt.Dimension | jdimExtend | 
| private  javax.swing.JPanel | p3 | 
| private  javax.swing.JSplitPane | pmain | 
| static PendingResults | resultsManagerto manage the pending results | 
| private  javax.swing.JScrollPane | scrollTree | 
| static DragTree | tree | 
| (package private) static boolean | withSoaptrue if in client-server mode (using SOAP) | 
| Constructor Summary | |
| Jemboss() | |
| Method Summary | |
|  void | actionPerformed(java.awt.event.ActionEvent ae)Action event to open the file manager | 
| private  void | deleteTmp(java.io.File cwd,
          java.lang.String suffix)Delete temporary files | 
| static void | main(java.lang.String[] args)Launches Jemboss in standalone or client-server mode. | 
| Methods inherited from class java.lang.Object | 
| clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait | 
| Field Detail | 
private javax.swing.JFrame f
private javax.swing.JSplitPane pmain
private javax.swing.JPanel p3
public static DragTree tree
private javax.swing.JButton extend
private javax.swing.JScrollPane scrollTree
static boolean withSoap
public static PendingResults resultsManager
private static java.awt.Dimension jdim
private static java.awt.Dimension jdimExtend
private javax.swing.ImageIcon fwdArrow
private javax.swing.ImageIcon bwdArrow
| Constructor Detail | 
public Jemboss()
| Method Detail | 
public void actionPerformed(java.awt.event.ActionEvent ae)
actionPerformed in interface java.awt.event.ActionListener
private void deleteTmp(java.io.File cwd,
                       java.lang.String suffix)
public static void main(java.lang.String[] args)
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