| 1 |  | 
|---|
| 2 |  | 
|---|
| 3 |  | 
|---|
| 4 |  | 
|---|
| 5 | <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> | 
|---|
| 6 | <html lang="en"> | 
|---|
| 7 | <head> | 
|---|
| 8 | <link rel="alternate" type="application/rss+xml" title="RCSB PDB - Latest Released Structures" href="/pdb/rss/LastLoad"> | 
|---|
| 9 | <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> | 
|---|
| 10 | <title>RCSB PDB : Structure Explorer</title> | 
|---|
| 11 | <link rel="shortcut icon" href="/pdbstatic/images/pdb.ico" type="image/x-icon"> | 
|---|
| 12 | <link rel="stylesheet" href="/pdb/skins/pastel/styles/pdbcomp.css" type="text/css"> | 
|---|
| 13 |  | 
|---|
| 14 |  | 
|---|
| 15 | <script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/comp.js"></script> | 
|---|
| 16 | <script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/expandable.js"></script> | 
|---|
| 17 | <script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/results.js"></script> | 
|---|
| 18 | <script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/pdbajax.js"></script> | 
|---|
| 19 | <script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/htmlhttprequest_commented.js"></script> | 
|---|
| 20 |  | 
|---|
| 21 |  | 
|---|
| 22 |  | 
|---|
| 23 |  | 
|---|
| 24 |  | 
|---|
| 25 |  | 
|---|
| 26 |  | 
|---|
| 27 |  | 
|---|
| 28 |  | 
|---|
| 29 |  | 
|---|
| 30 |  | 
|---|
| 31 |  | 
|---|
| 32 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 33 |  | 
|---|
| 34 | var resultSorts = new Array(); | 
|---|
| 35 |  | 
|---|
| 36 | function openWindow(url){ | 
|---|
| 37 | var w = window.open ("", "win", "height=600,width=800,location,menubar,resizable,scrollbars,status,toolbar"); | 
|---|
| 38 | w.location.href = url; | 
|---|
| 39 | w.focus(); | 
|---|
| 40 | } | 
|---|
| 41 | function openWindowToSize(url,width,height){ | 
|---|
| 42 | var w = window.open ("", "win", "height="+height+",width="+width+",left=80,top=100,location,menubar,resizable,scrollbars,status,toolbar"); | 
|---|
| 43 | w.location.href = url; | 
|---|
| 44 | w.focus(); | 
|---|
| 45 | } | 
|---|
| 46 |  | 
|---|
| 47 |  | 
|---|
| 48 |  | 
|---|
| 49 | var roboloc = '/robohelp/'; | 
|---|
| 50 | navsites = [ | 
|---|
| 51 | "http://deposit.rcsb.org", | 
|---|
| 52 | "http://sg.pdb.org", | 
|---|
| 53 | "http://targetdb.pdb.org", | 
|---|
| 54 | "http://function.rcsb.org:8080/pdb/function_distribution/index.html", | 
|---|
| 55 | "http://mmcif.pdb.org", | 
|---|
| 56 | "http://pdbml.rcsb.org", | 
|---|
| 57 | "http://sw-tools.pdb.org", | 
|---|
| 58 | "http://deposit.pdb.org/cc_dict_tut.html", | 
|---|
| 59 | "http://pepcdb.pdb.org/" | 
|---|
| 60 |  | 
|---|
| 61 | ]; | 
|---|
| 62 | helpsites = [ | 
|---|
| 63 | "data_deposition_and_processing/how_to_deposit.htm", | 
|---|
| 64 | "validation_server/how_to_validate.htm", | 
|---|
| 65 | "data_download/how_to_download.htm", | 
|---|
| 66 | "search_database/how_to_search.htm", | 
|---|
| 67 | "browse_database/how_to_browse.htm", | 
|---|
| 68 | "molecular_viewers/introduction_to_molecular_viewers.htm", | 
|---|
| 69 | "files_formats/structures/chemical_component_format/chemical_component_introduction.htm", | 
|---|
| 70 | "data_download/structure_download.htm", | 
|---|
| 71 | "data_download/ftp_services.htm", | 
|---|
| 72 | "data_download/theoretical_models.htm", | 
|---|
| 73 | "data_download/cd_rom_dvd.htm", | 
|---|
| 74 | "structuralgenomics/sg_home.htm", | 
|---|
| 75 | "structuralgenomics/targetdb.htm", | 
|---|
| 76 | "structuralgenomics/pepcdb.htm", | 
|---|
| 77 | "structuralgenomics/function_distributions.htm", | 
|---|
| 78 | "files_formats/intro_dictionaries_file_formats.htm", | 
|---|
| 79 | "software/tools/deposition_mmcif_tools.htm", | 
|---|
| 80 | "data_deposition_and_processing/how_to_deposit.htm", | 
|---|
| 81 | "data_deposition_and_processing/deposition_tools_at_a_glance.htm", | 
|---|
| 82 | "site_navigation/citing_the_pdb.htm" | 
|---|
| 83 | ]; | 
|---|
| 84 | navalerts = [ | 
|---|
| 85 | "Discussion Forums are not yet active.  Please check back later." | 
|---|
| 86 | ]; | 
|---|
| 87 | function openWindowFromNav(urltype, urlnumber) | 
|---|
| 88 | { | 
|---|
| 89 | if (urltype == 0) | 
|---|
| 90 | { | 
|---|
| 91 |  | 
|---|
| 92 | openWindow(navsites[urlnumber]); | 
|---|
| 93 | } | 
|---|
| 94 | else if (urltype == 1) | 
|---|
| 95 | { | 
|---|
| 96 | callHelp(roboloc, helpsites[urlnumber]); | 
|---|
| 97 | } | 
|---|
| 98 | else if (urltype == 2) | 
|---|
| 99 | { | 
|---|
| 100 | alert(navalerts[urlnumber]); | 
|---|
| 101 | } | 
|---|
| 102 | } | 
|---|
| 103 |  | 
|---|
| 104 |  | 
|---|
| 105 |  | 
|---|
| 106 |  | 
|---|
| 107 |  | 
|---|
| 108 | var ICONPATH = '/pdb/skins/pastel/images/tree/'; | 
|---|
| 109 | USETEXTLINKS = 1; | 
|---|
| 110 | STARTALLOPEN = 0; | 
|---|
| 111 | USEFRAMES = 0; | 
|---|
| 112 | USEICONS = 1; | 
|---|
| 113 | WRAPTEXT = 0; | 
|---|
| 114 | PRESERVESTATE = 1; | 
|---|
| 115 | HIGHLIGHT=1; | 
|---|
| 116 | ALLOWTOPLEVELRETRACTION = 1; | 
|---|
| 117 |  | 
|---|
| 118 |  | 
|---|
| 119 |  | 
|---|
| 120 |  | 
|---|
| 121 | var pdbPathNames = new Object(); | 
|---|
| 122 |  | 
|---|
| 123 | function myInsDoc(nn,folder,opt,link,iconsrc) | 
|---|
| 124 | { | 
|---|
| 125 |  | 
|---|
| 126 | { | 
|---|
| 127 | if (link.substring(0,5) == '/pdb/') | 
|---|
| 128 | { | 
|---|
| 129 | pdbPathNames[link] = nn; | 
|---|
| 130 | } | 
|---|
| 131 | } | 
|---|
| 132 | var myInsDocSub = insDoc(folder,gLnk(opt, nn, link.replace(/'/g, "\\'"))); | 
|---|
| 133 | myInsDocSub.xID = nn; | 
|---|
| 134 | if (iconsrc) | 
|---|
| 135 | { | 
|---|
| 136 | myInsDocSub.iconSrc = iconsrc; | 
|---|
| 137 | } | 
|---|
| 138 | else | 
|---|
| 139 | { | 
|---|
| 140 | myInsDocSub.iconSrc = ICONPATH + 'ftvsquare.gif'; | 
|---|
| 141 | } | 
|---|
| 142 | return myInsDocSub; | 
|---|
| 143 | } | 
|---|
| 144 |  | 
|---|
| 145 | function myInsFolder(nn,folder,link) | 
|---|
| 146 | { | 
|---|
| 147 | if (link.substring(0,5) == '/pdb/') | 
|---|
| 148 | { | 
|---|
| 149 | pdbPathNames[link] = nn; | 
|---|
| 150 | } | 
|---|
| 151 | var myInsFldSub = insFld(folder,gFld(nn, link.replace(/'/g, "\\'"))); | 
|---|
| 152 | myInsFldSub.xID = nn.replace(/amp;/g, ''); | 
|---|
| 153 | return myInsFldSub; | 
|---|
| 154 | } | 
|---|
| 155 |  | 
|---|
| 156 | function checkLocation() | 
|---|
| 157 | { | 
|---|
| 158 | var pn = window.location.pathname + window.location.search; | 
|---|
| 159 | for (prop in pdbPathNames) | 
|---|
| 160 | { | 
|---|
| 161 | if (pn.indexOf(prop) >= 0) | 
|---|
| 162 | { | 
|---|
| 163 | var docObj; | 
|---|
| 164 | docObj = findObj(pdbPathNames[prop]); | 
|---|
| 165 | docObj.forceOpeningOfAncestorFolders(); | 
|---|
| 166 | highlightObjLink(docObj); | 
|---|
| 167 | break; | 
|---|
| 168 | } | 
|---|
| 169 | } | 
|---|
| 170 | } | 
|---|
| 171 |  | 
|---|
| 172 |  | 
|---|
| 173 |  | 
|---|
| 174 | function addHomeTree() | 
|---|
| 175 | { | 
|---|
| 176 |  | 
|---|
| 177 | } | 
|---|
| 178 |  | 
|---|
| 179 | function addSearchTree() | 
|---|
| 180 | { | 
|---|
| 181 |  | 
|---|
| 182 | } | 
|---|
| 183 |  | 
|---|
| 184 |  | 
|---|
| 185 |  | 
|---|
| 186 | function addExploreTree() | 
|---|
| 187 | { | 
|---|
| 188 |  | 
|---|
| 189 | fSub = myInsDoc('<b>1CY0<\/b>',f,'S','/pdb/explore.do?structureId=1CY0'); | 
|---|
| 190 |  | 
|---|
| 191 | fSub = myInsFolder('Download Files',f,''); | 
|---|
| 192 | fSubSub = myInsDoc('PDB File',fSub,'S','/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=1CY0'); | 
|---|
| 193 | fSubSub = myInsDoc('PDB gz',fSub,'S','/pdb/files/1cy0.pdb.gz'); | 
|---|
| 194 | fSubSub = myInsDoc('PDB File (Header)',fSub,'S','/pdb/download/downloadFile.do?fileFormat=pdb&headerOnly=YES&structureId=1CY0'); | 
|---|
| 195 | fSubSub = myInsDoc('mmCIF File',fSub,'S','/pdb/download/downloadFile.do?fileFormat=cif&compression=NO&structureId=1CY0'); | 
|---|
| 196 | fSubSub = myInsDoc('mmCIF gz',fSub,'S','/pdb/files/1cy0.cif.gz'); | 
|---|
| 197 | fSubSub = myInsDoc('mmCIF File (Header)',fSub,'S','/pdb/download/downloadFile.do?fileFormat=cif&headerOnly=YES&structureId=1CY0'); | 
|---|
| 198 | fSubSub = myInsDoc('PDBML/XML File',fSub,'S','/pdb/download/downloadFile.do?fileFormat=xml&compression=NO&structureId=1CY0'); | 
|---|
| 199 | fSubSub = myInsDoc('PDBML/XML gz',fSub,'S','/pdb/files/1cy0.xml.gz'); | 
|---|
| 200 | fSubSub = myInsDoc('PDBML/XML File (Header)',fSub,'S','/pdb/download/downloadFile.do?fileFormat=xml&headerOnly=YES&structureId=1CY0'); | 
|---|
| 201 |  | 
|---|
| 202 |  | 
|---|
| 203 | fSubSub = myInsDoc('Biological Unit Coordinates',fSub,'S','/pdb/files/1cy0.pdb1.gz'); | 
|---|
| 204 |  | 
|---|
| 205 | fSub = myInsDoc('FASTA Sequence',f,'S','/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=1CY0'); | 
|---|
| 206 |  | 
|---|
| 207 | fSub = myInsFolder('Display Files',f,''); | 
|---|
| 208 |  | 
|---|
| 209 | fSubSub = myInsDoc('Custom Structure Summary',fSub,'S','/pdb/explore/customStructureReportForm.do?exptype=misc'); | 
|---|
| 210 |  | 
|---|
| 211 | fSubSub = myInsDoc('PDB File',fSub,'B','/pdb/files/1cy0.pdb'); | 
|---|
| 212 | fSubSub = myInsDoc('PDB File (Header)',fSub,'B','/pdb/files/1cy0.pdb?headerOnly=YES'); | 
|---|
| 213 | fSubSub = myInsDoc('mmCIF File',fSub,'B','/pdb/files/1cy0.cif'); | 
|---|
| 214 | fSubSub = myInsDoc('mmCIF File (Header)',fSub,'B','/pdb/files/1cy0.cif?headerOnly=YES'); | 
|---|
| 215 | fSubSub = myInsDoc('PDBML/XML File',fSub,'B','/pdb/files/1cy0.xml'); | 
|---|
| 216 | fSubSub = myInsDoc('PDBML/XML (Header)',fSub,'B','/pdb/files/1cy0.xml?headerOnly=YES'); | 
|---|
| 217 |  | 
|---|
| 218 | fSub = myInsFolder('Display Molecule',f,''); | 
|---|
| 219 | fSubSub = myInsDoc('Image Gallery',fSub,'S','/pdb/explore/images.do?structureId=1CY0'); | 
|---|
| 220 | fSubSub = myInsDoc('KiNG Viewer',fSub,'S','/pdb/static.do?p=explorer/viewers/king.jsp'); | 
|---|
| 221 | fSubSub = myInsDoc('Jmol Viewer',fSub,'S','/pdb/static.do?p=explorer/viewers/jmol.jsp'); | 
|---|
| 222 | fSubSub = myInsDoc('WebMol Viewer',fSub,'S','/pdb/static.do?p=explorer/viewers/webmol.jsp'); | 
|---|
| 223 | fSubSub = myInsDoc('Protein Workshop',fSub,'S','/pdb/Viewers/ProteinWorkshop/protein_workshop_launch.jsp'); | 
|---|
| 224 | fSubSub = myInsDoc('Rasmol Viewer <br>(<b>Plugin required</b>)',fSub,'B','/pdb/download/downloadFile.do?fileFormat=PDB&display=rasmol&compression=NO&structureId=1CY0'); | 
|---|
| 225 | fSubSub = myInsDoc('Swiss-PDB Viewer <br>(<b>Plugin required</b>)',fSub,'B','/pdb/download/downloadFile.do?fileFormat=PDB&display=spdbv&compression=NO&structureId=1CY0'); | 
|---|
| 226 | fSubSub = myInsDoc('KiNG Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/king.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 227 | fSubSub = myInsDoc('Jmol Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/jmol.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 228 | fSubSub = myInsDoc('WebMol Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/webmol.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 229 | fSubSub = myInsDoc('Protein Workshop Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/proteinworkshop.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 230 | fSubSub = myInsDoc('QuickPDB',fSub,'S','javascript:callHelp(roboLoc,\'viewers/thequickpdb.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 231 |  | 
|---|
| 232 |  | 
|---|
| 233 | fSubSub = myInsDoc('Asymmetric Unit /<br> Biological Molecule',fSub,'S','/pdb/static.do?p=explorer/singleimage.jsp&structureId=1cy0&type=asym&size=500'); | 
|---|
| 234 |  | 
|---|
| 235 | fSub = myInsDoc('<b>Structural Reports</b> ',f,'S','/pdb/explore/biologyAndChemistry.do'); | 
|---|
| 236 | fSub = myInsDoc('<b>External Links</b> ',f,'S','/pdb/explore/externalReferences.do'); | 
|---|
| 237 |  | 
|---|
| 238 | fSub = myInsFolder('Structure Analysis ',f,''); | 
|---|
| 239 | fSubSub = myInsFolder('Geometry ',fSub,''); | 
|---|
| 240 |  | 
|---|
| 241 |  | 
|---|
| 242 | fSubSubSub = myInsDoc('RCSB Graphics',fSubSub,'S','/pdb/explore/geometryGraph.do?structureId=1CY0'); | 
|---|
| 243 | fSubSubSub = myInsDoc('RCSB Tables',fSubSub,'S','/pdb/explore/geometryDisplay.do'); | 
|---|
| 244 |  | 
|---|
| 245 | fSubSubSub = myInsDoc('MolProbity Ramachandran Plot',fSubSub,'B','/pdb/images/1CY0_ram_m_500.pdf'); | 
|---|
| 246 |  | 
|---|
| 247 |  | 
|---|
| 248 | fSubSub = myInsFolder('Sequence Variants  ',fSub,''); | 
|---|
| 249 |  | 
|---|
| 250 | fSubSubSub = myInsDoc('TOP1_ECOLI Variants',fSubSub,'S','/pdb/search/smartSubquery.do?structureId=1CY0&variant=1&smartSearchSubtype=StructureVariantQuery&spId=TOP1_ECOLI'); | 
|---|
| 251 |  | 
|---|
| 252 | fSubSubSub = myInsDoc('TOP1_ECOLI Non-Variants',fSubSub,'S','/pdb/search/smartSubquery.do?structureId=1CY0&variant=0&smartSearchSubtype=StructureVariantQuery&spId=TOP1_ECOLI'); | 
|---|
| 253 |  | 
|---|
| 254 | fSub = myInsFolder('Help ',f,''); | 
|---|
| 255 | fSubSub = myInsDoc('Structure Explorer Intro',fSub,'S','javascript:callHelp(roboLoc,\'structure_explorer/introduction_to_structure_explorer.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 256 | fSubSub = myInsDoc('Molecular Viewers',fSub,'S','javascript:callHelp(roboLoc,\'molecular_viewers/introduction_to_molecular_viewers.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 257 | fSubSub = myInsDoc('Structure Summary',fSub,'S','javascript:callHelp(roboLoc,\'structure_explorer/summary_information.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 258 | fSubSub = myInsDoc('Biological Molecule',fSub,'S','javascript:callHelp(roboLoc,\'data_download/biological_unit/biological_unit_introduction.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 259 | fSubSub = myInsDoc('Biology & Chemistry',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/quick_links_biology_and_chemistry.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 260 | fSubSub = myInsDoc('Sequence Details',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/quick_links_sequence_details.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 261 | fSubSub = myInsDoc('Structural Features',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/quick_links.structural_features.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 262 | fSubSub = myInsDoc('Materials & Methods (X-Ray)',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/materials_and_methods/x-ray_materials_and_methods.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 263 | fSubSub = myInsDoc('Materials & Methods (NMR)',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/materials_and_methods/nmr_materials_and_methods.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 264 |  | 
|---|
| 265 |  | 
|---|
| 266 | } | 
|---|
| 267 |  | 
|---|
| 268 | function addReportTree() | 
|---|
| 269 | { | 
|---|
| 270 |  | 
|---|
| 271 | fSub = myInsDoc('<b>Show Query Details<\/b>',f,'S','/pdb/static.do?p=results/queryDesc.jsp'); | 
|---|
| 272 | fSub = myInsDoc('Results Help',f,'S','javascript:callHelp(\'/robohelp/\',\'query_results_browser/introduction_to_results_browser.htm\');',ICONPATH + 'question.gif'); | 
|---|
| 273 |  | 
|---|
| 274 | } | 
|---|
| 275 |  | 
|---|
| 276 | function addQueriesTree() | 
|---|
| 277 | { | 
|---|
| 278 | fSub = myInsDoc('Clear queries',f,'S','/pdb/queries/clearqueries.do'); | 
|---|
| 279 | } | 
|---|
| 280 |  | 
|---|
| 281 | </script> | 
|---|
| 282 |  | 
|---|
| 283 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 284 | var roboLoc = "/robohelp/"; | 
|---|
| 285 | </script> | 
|---|
| 286 | </head> | 
|---|
| 287 |  | 
|---|
| 288 | <body bgcolor="#ffffff" style="margin:10px 10px 10px 10px;" onload="liveSearchInit();pdbBodyLoadInit();"> | 
|---|
| 289 |  | 
|---|
| 290 |  | 
|---|
| 291 |  | 
|---|
| 292 | <iframe src="/pdb/browse/menu_empty.html" name="retriever" id="retriever" width="100%" height="1" frameborder="0"> | 
|---|
| 293 | <p> </p> | 
|---|
| 294 | </iframe> | 
|---|
| 295 |  | 
|---|
| 296 |  | 
|---|
| 297 | <table border="0" cellpadding="0" cellspacing="0" align="center" > | 
|---|
| 298 | <tbody> | 
|---|
| 299 |  | 
|---|
| 300 | <tr> | 
|---|
| 301 | <td colspan="3"> | 
|---|
| 302 |  | 
|---|
| 303 |  | 
|---|
| 304 |  | 
|---|
| 305 |  | 
|---|
| 306 |  | 
|---|
| 307 |  | 
|---|
| 308 | <script language="Javascript" type="text/javascript"> | 
|---|
| 309 | function checkSequenceLength() | 
|---|
| 310 | { | 
|---|
| 311 | if ((document.headerQueryForm.inputQuickSearch.value.substr(0,9) == 'sequence:')&&(document.headerQueryForm.inputQuickSearch.value.length < 15)) | 
|---|
| 312 | { | 
|---|
| 313 | alert('Sequence searches must be at least 6 characters long'); | 
|---|
| 314 | return false; | 
|---|
| 315 | } | 
|---|
| 316 | else | 
|---|
| 317 | return liveSearchSubmit(); | 
|---|
| 318 |  | 
|---|
| 319 | } | 
|---|
| 320 |  | 
|---|
| 321 | </script> | 
|---|
| 322 | <form action="/pdb/search/navbarsearch.do" onSubmit="return checkSequenceLength();" method="get" name="headerQueryForm"> | 
|---|
| 323 | <table border="0" cellpadding="0" cellspacing="0" width="100%"> | 
|---|
| 324 | <tr> | 
|---|
| 325 | <td width="210"><a href="/pdb"><img alt="RCSB PDB Protein Data Bank | Home" title="RCSB PDB Protein Data Bank | Home" src="/pdb/skins/pastel/images/header/pdblogo.gif" width="198" border="0"></a></td> | 
|---|
| 326 | <td align="right" class="headertop" colspan="2"> | 
|---|
| 327 | <a href="http://www.wwpdb.org/" target="_blank"><img alt="A Member of the wwPDB" title="A Member of the wwPDB" src="/pdb/skins/pastel/images/header/wwpdb.gif" width="191" height="15" border="0"></a><br/> | 
|---|
| 328 | An Information Portal to Biological Macromolecular Structures | 
|---|
| 329 | <br/> | 
|---|
| 330 | <span class="body"> | 
|---|
| 331 | As of <a href="/pdb/search/smartSubquery.do?smartSearchSubtype=LastLoadQuery">Tuesday Dec 26, 2006</a> <a href="/pdb/rss/LastLoad" title="RSS Feed for the Latest Released Structures"><img alt="RSS Feed for the Latest Released Structures" border="0" src="/pdbstatic/images/feed-icon16x16.png"></a> | 
|---|
| 332 | there are 40870 Structures | 
|---|
| 333 | <a href="javascript:callHelp(roboLoc, 'search_database/latest_release/introduction_to_latest_release.htm');"><img alt="  ? " title="  ? " src="/pdb/skins/pastel/images/tree/question.gif" border="0" style="vertical-align:middle;"></a> | 
|---|
| 334 |  |  | 
|---|
| 335 | <a href="/pdb/static.do?p=general_information/pdb_statistics/index.html&">PDB Statistics</a><a href="javascript:callHelp(roboLoc, 'web_site/pdb_statistics.htm');"><img alt="  ? " title="  ? " src="/pdb/skins/pastel/images/tree/question.gif" border="0" style="vertical-align:middle;"></a> | 
|---|
| 336 | </span> | 
|---|
| 337 | </td> | 
|---|
| 338 | </tr> | 
|---|
| 339 |  | 
|---|
| 340 | <tr> | 
|---|
| 341 | <td style="vertical-align:top;padding-top:0.2em;"> | 
|---|
| 342 | <a href="/pdb/static.do?p=general_information/about_pdb/contact/index.html" class="tabblutxt">Contact Us</a> | | 
|---|
| 343 | <a href="javascript:callHelp(roboLoc,'site_navigation/introduction_to_site_navigation.htm');" class="tabblutxt">Help</a> | | 
|---|
| 344 | <a href="javascript:printPage('http://www.rcsb.org/pdb/explore/explore.do?structureId=1CY0');" class="tabblutxt">Print Page</a> | 
|---|
| 345 | </td> | 
|---|
| 346 | <td style="background-image:url('/pdb/skins/pastel/images/header/header_bg2.jpg');background-repeat: repeat-x;vertical-align:top;background-position: 0% 100%;" width="37" rowspan="2"><img src="/pdbstatic/images/spacer.gif" alt="" width="37" height="35" border="0"></td> | 
|---|
| 347 |  | 
|---|
| 348 |  | 
|---|
| 349 | <td nowrap style="background-image:url('/pdb/skins/pastel/images/header/header_bg3.jpg');background-repeat: repeat-x;background-color:#3333FF;background-position: 0% 100%;padding-right:2px;" class="topnavlinks" rowspan="2"> | 
|---|
| 350 |  | 
|---|
| 351 | <table> | 
|---|
| 352 | <tr> | 
|---|
| 353 | <td nowrap class="topnavlinks"> | 
|---|
| 354 | <input type="hidden" name="newSearch" value="yes"> | 
|---|
| 355 | <input type="hidden" name="isAuthorSearch" value="no"  > | 
|---|
| 356 | <input type="radio" name="radioset" value="All"  checked  class="radio" onclick="javascript:document.headerQueryForm.isAuthorSearch.value='no';">PDB ID or keyword | 
|---|
| 357 | <input type="radio" name="radioset" value="Authors"  class="radio" onclick="javascript:if(this.checked){document.headerQueryForm.isAuthorSearch.value='yes';}">Author | 
|---|
| 358 | </td> | 
|---|
| 359 | <td class="topnavlinks" nowrap> | 
|---|
| 360 | <input type="text"  class="input" size="10" name="inputQuickSearch" id="livesearch" onkeypress="liveSearchStart()" onblur="setTimeout('closeResults()',10000);" > | 
|---|
| 361 | <div id="LSResult" style="display: none;"><div id="LSShadow"></div></div> | 
|---|
| 362 | </td> | 
|---|
| 363 | <td class="topnavlinks" nowrap> | 
|---|
| 364 | <input type="image" src="/pdb/skins/pastel/images/header/header_search.gif" size="61" value="Search" class="text" align="middle" name="image" alt="Search" title="Search"> | 
|---|
| 365 | <a href="javascript:callHelp(roboLoc, 'search_database/top_bar_search/top_bar_search.htm');"><img alt="  ? " title="  ? " src="/pdb/skins/pastel/images/header/mainquestion.gif" border="0" style="vertical-align:middle;"></a> | 
|---|
| 366 | | <a href="/pdb/search/advSearch.do" class="textwhite">Advanced Search</a> | 
|---|
| 367 | </td> | 
|---|
| 368 | </tr> | 
|---|
| 369 | </table> | 
|---|
| 370 |  | 
|---|
| 371 | </td> | 
|---|
| 372 | </tr> | 
|---|
| 373 |  | 
|---|
| 374 | <tr> | 
|---|
| 375 | <td style="background-image:url('/pdb/skins/pastel/images/header/header_bg1.jpg');text-align:left;background-repeat: repeat-x;vertical-align:top;background-position: 0% 100%;"><img src="/pdbstatic/images/spacer.gif" alt="" width="37" height="13" border="0"></td> | 
|---|
| 376 | </tr> | 
|---|
| 377 | </table> | 
|---|
| 378 | </form> | 
|---|
| 379 |  | 
|---|
| 380 |  | 
|---|
| 381 |  | 
|---|
| 382 |  | 
|---|
| 383 |  | 
|---|
| 384 |  | 
|---|
| 385 |  | 
|---|
| 386 |  | 
|---|
| 387 | </td> | 
|---|
| 388 | </tr> | 
|---|
| 389 |  | 
|---|
| 390 | <tr valign="top"> | 
|---|
| 391 | <td  class="navbackground" style="width:230px;"> | 
|---|
| 392 |  | 
|---|
| 393 |  | 
|---|
| 394 |  | 
|---|
| 395 |  | 
|---|
| 396 |  | 
|---|
| 397 |  | 
|---|
| 398 |  | 
|---|
| 399 |  | 
|---|
| 400 |  | 
|---|
| 401 | <table border="0" cellpadding="0" cellspacing="0"> | 
|---|
| 402 | <tr> | 
|---|
| 403 | <td class="navbackground"> | 
|---|
| 404 | <div id="hdrtab"> | 
|---|
| 405 | <ul> | 
|---|
| 406 | <li><a href="/pdb/Welcome.do">Home</a></li> | 
|---|
| 407 | <li><a href="/pdb/static.do?p=search/index.html">Search</a></li> | 
|---|
| 408 |  | 
|---|
| 409 | <li id="current"><a>Structure</a></li> | 
|---|
| 410 |  | 
|---|
| 411 | </ul> | 
|---|
| 412 | </div> | 
|---|
| 413 | </td> | 
|---|
| 414 | </tr> | 
|---|
| 415 | <tr> | 
|---|
| 416 | <td class="navbackground"> | 
|---|
| 417 | <a style="font-size:1pt;text-decoration:none;color:#FFFF99" href="http://www.treemenu.net/" target=_blank></a> | 
|---|
| 418 | <span class="TreeviewSpanArea"> | 
|---|
| 419 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 420 | foldersTree = gFld('', ''); | 
|---|
| 421 | foldersTree.treeID = 'ExploreRoot'; | 
|---|
| 422 | foldersTree.xID = foldersTree.treeID; | 
|---|
| 423 | f = foldersTree; | 
|---|
| 424 | addExploreTree(); | 
|---|
| 425 | initializeDocument(); | 
|---|
| 426 | checkLocation(); | 
|---|
| 427 | </script> | 
|---|
| 428 |  | 
|---|
| 429 | </span> | 
|---|
| 430 | </td> | 
|---|
| 431 | </tr> | 
|---|
| 432 | <tr> | 
|---|
| 433 | <td class="homewhite" height="1"><img src="/pdbstatic/images/spacer.gif" alt="" width="1" height="1" border="0"></td> | 
|---|
| 434 | </tr> | 
|---|
| 435 | </table> | 
|---|
| 436 |  | 
|---|
| 437 |  | 
|---|
| 438 |  | 
|---|
| 439 |  | 
|---|
| 440 |  | 
|---|
| 441 | </td> | 
|---|
| 442 |  | 
|---|
| 443 | <td valign="top" style="vertical-align:top;"> | 
|---|
| 444 | <table border="0" cellpadding="0" cellspacing="0"> | 
|---|
| 445 | <tr> | 
|---|
| 446 | <td valign="top" class="maintd"> | 
|---|
| 447 | <noscript><div style="padding-left:8px;font-weight:bold;color:#FF0000;font-size:16px">This browser is either not Javascript enabled or has it turned off.<br />This site will not function correctly without Javascript.</div></noscript> | 
|---|
| 448 |  | 
|---|
| 449 |  | 
|---|
| 450 |  | 
|---|
| 451 |  | 
|---|
| 452 |  | 
|---|
| 453 |  | 
|---|
| 454 |  | 
|---|
| 455 |  | 
|---|
| 456 |  | 
|---|
| 457 | <div id="hdrtab"> | 
|---|
| 458 | <ul> | 
|---|
| 459 |  | 
|---|
| 460 | <li><a href="/pdb/explore.do?structureId=1CY0">Structure Summary</a></li> | 
|---|
| 461 |  | 
|---|
| 462 | <li><a href="/pdb/explore/biologyAndChemistry.do?structureId=1CY0">Biology & Chemistry</a></li> | 
|---|
| 463 |  | 
|---|
| 464 | <li><a href="/pdb/explore/materialsAndMethods.do?structureId=1CY0">Materials & Methods</a></li> | 
|---|
| 465 |  | 
|---|
| 466 | <li><a href="/pdb/explore/sequence.do?structureId=1CY0">Sequence Details</a></li> | 
|---|
| 467 |  | 
|---|
| 468 | <li><a href="/pdb/explore/geometryDisplay.do?structureId=1CY0">Geometry</a></li> | 
|---|
| 469 |  | 
|---|
| 470 | </ul> | 
|---|
| 471 | </div> | 
|---|
| 472 | </td> | 
|---|
| 473 | </tr> | 
|---|
| 474 |  | 
|---|
| 475 | <tr> | 
|---|
| 476 | <td> | 
|---|
| 477 | <font color="RED"><b>LIMITED FUNCTIONALITY BROWSER</b></font> | 
|---|
| 478 | <br /> | 
|---|
| 479 | <span class="static_header"> | 
|---|
| 480 | You are currently using a browser that is not fully compatible with this website.<br /> | 
|---|
| 481 | If you would like to have full functionality, please upgrade your browser. <br /> | 
|---|
| 482 |  | 
|---|
| 483 |  | 
|---|
| 484 | <a href="/pdb/static.do?p=home/faq.html#goodBrowsers">List of Supported & Unsupported Browsers for the RCSB Protein Data Bank Web Site</a> <br /> | 
|---|
| 485 |  | 
|---|
| 486 | <br /> | 
|---|
| 487 | </span> | 
|---|
| 488 | </td> | 
|---|
| 489 | </tr> | 
|---|
| 490 |  | 
|---|
| 491 | <tr> | 
|---|
| 492 | <td valign="top" class="maintd" style="padding-left:10px;"> | 
|---|
| 493 |  | 
|---|
| 494 |  | 
|---|
| 495 |  | 
|---|
| 496 |  | 
|---|
| 497 |  | 
|---|
| 498 |  | 
|---|
| 499 |  | 
|---|
| 500 |  | 
|---|
| 501 |  | 
|---|
| 502 |  | 
|---|
| 503 |  | 
|---|
| 504 |  | 
|---|
| 505 |  | 
|---|
| 506 |  | 
|---|
| 507 |  | 
|---|
| 508 |  | 
|---|
| 509 |  | 
|---|
| 510 |  | 
|---|
| 511 |  | 
|---|
| 512 |  | 
|---|
| 513 |  | 
|---|
| 514 |  | 
|---|
| 515 |  | 
|---|
| 516 |  | 
|---|
| 517 |  | 
|---|
| 518 |  | 
|---|
| 519 |  | 
|---|
| 520 |  | 
|---|
| 521 |  | 
|---|
| 522 |  | 
|---|
| 523 |  | 
|---|
| 524 |  | 
|---|
| 525 |  | 
|---|
| 526 |  | 
|---|
| 527 |  | 
|---|
| 528 |  | 
|---|
| 529 |  | 
|---|
| 530 |  | 
|---|
| 531 |  | 
|---|
| 532 |  | 
|---|
| 533 |  | 
|---|
| 534 |  | 
|---|
| 535 |  | 
|---|
| 536 |  | 
|---|
| 537 |  | 
|---|
| 538 |  | 
|---|
| 539 |  | 
|---|
| 540 |  | 
|---|
| 541 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 542 |  | 
|---|
| 543 | function searchCitationAuthor(author, primary) | 
|---|
| 544 | { | 
|---|
| 545 | document.queryCitationAuthorForm.elements['citation_author.name.value'].value = author; | 
|---|
| 546 | document.queryCitationAuthorForm.elements['citation_author.name.comparator'].value = "equals"; | 
|---|
| 547 | if (primary) | 
|---|
| 548 | document.queryCitationAuthorForm.elements['citation_author.citation_id.value'].value="primary"; | 
|---|
| 549 | document.queryCitationAuthorForm.submit(); | 
|---|
| 550 | } | 
|---|
| 551 |  | 
|---|
| 552 | function searchStructureAuthor(author) | 
|---|
| 553 | { | 
|---|
| 554 | document.queryStructureAuthorForm.elements['authName'].value = author; | 
|---|
| 555 | document.queryStructureAuthorForm.submit(); | 
|---|
| 556 | } | 
|---|
| 557 |  | 
|---|
| 558 | function searchPdbxKeyword(keyword) | 
|---|
| 559 | { | 
|---|
| 560 | document.queryKeywordsForm.elements['struct_keywords.pdbx_keywords.value'].value = keyword; | 
|---|
| 561 | document.queryKeywordsForm.submit(); | 
|---|
| 562 | } | 
|---|
| 563 |  | 
|---|
| 564 | function searchLigand(id) | 
|---|
| 565 | { | 
|---|
| 566 | document.ligandQueryForm.elements['chem_comp.id.value'].value = id; | 
|---|
| 567 | document.ligandQueryForm.elements['chem_comp.id.comparator'].value = "="; | 
|---|
| 568 | document.ligandQueryForm.submit(); | 
|---|
| 569 | } | 
|---|
| 570 | function searchEc(ec) | 
|---|
| 571 | { | 
|---|
| 572 | document.ecQueryForm.elements['entity.pdbx_ec.value'].value = ec; | 
|---|
| 573 | document.ecQueryForm.elements['entity.pdbx_ec.comparator'].value = "="; | 
|---|
| 574 | document.ecQueryForm.submit(); | 
|---|
| 575 | } | 
|---|
| 576 | function searchSpaceGroup(sg) | 
|---|
| 577 | { | 
|---|
| 578 | document.sgQueryForm.elements['symmetry.space_group_name_H-M.value'].value = sg; | 
|---|
| 579 | document.sgQueryForm.elements['symmetry.space_group_name_H-M.comparator'].value = "="; | 
|---|
| 580 | document.sgQueryForm.submit(); | 
|---|
| 581 | } | 
|---|
| 582 |  | 
|---|
| 583 | function searchSource(natSci, natCommon, genSci, genCommon) | 
|---|
| 584 | { | 
|---|
| 585 | document.srcQueryForm.elements['entity_src_nat.pdbx_organism_scientific.value'].value = natSci; | 
|---|
| 586 | document.srcQueryForm.elements['entity_src_nat.common_name.value'].value = natCommon; | 
|---|
| 587 | document.srcQueryForm.elements['entity_src_gen.pdbx_gene_src_scientific_name.value'].value = genSci; | 
|---|
| 588 | document.srcQueryForm.elements['entity_src_gen.gene_src_common_name.value'].value = genCommon; | 
|---|
| 589 | document.srcQueryForm.submit(); | 
|---|
| 590 | } | 
|---|
| 591 |  | 
|---|
| 592 | </script> | 
|---|
| 593 |  | 
|---|
| 594 |  | 
|---|
| 595 |  | 
|---|
| 596 |  | 
|---|
| 597 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 598 |  | 
|---|
| 599 | function queryByExample(s, t) | 
|---|
| 600 | { | 
|---|
| 601 | } | 
|---|
| 602 | function FW_startTimeout() | 
|---|
| 603 | { | 
|---|
| 604 | } | 
|---|
| 605 | function removeHighlight() | 
|---|
| 606 | { | 
|---|
| 607 | } | 
|---|
| 608 |  | 
|---|
| 609 | </script> | 
|---|
| 610 |  | 
|---|
| 611 | <table cellpadding="2" cellspacing="2" border="0" style="text-align: left; width: 100%;"> | 
|---|
| 612 | <tbody> | 
|---|
| 613 | <tr> | 
|---|
| 614 | <td style="vertical-align: top;"> | 
|---|
| 615 | <table cellpadding="5" cellspacing="2" border="0" style="text-align: left; width: 100%;"> | 
|---|
| 616 | <tbody> | 
|---|
| 617 | <tr> | 
|---|
| 618 | <td> | 
|---|
| 619 |  | 
|---|
| 620 |  | 
|---|
| 621 |  | 
|---|
| 622 |  | 
|---|
| 623 |  | 
|---|
| 624 |  | 
|---|
| 625 |  | 
|---|
| 626 |  | 
|---|
| 627 |  | 
|---|
| 628 | </td> | 
|---|
| 629 | <td style="text-align: right;"> | 
|---|
| 630 |  | 
|---|
| 631 |  | 
|---|
| 632 |  | 
|---|
| 633 |  | 
|---|
| 634 | <span class="se_pagetitle">1CY0 </span> | 
|---|
| 635 | <a href="/pdb/files/1cy0.pdb" title="Display PDB file" target="_blank"><img src="/pdbstatic/images/summary.jpg" alt="Display PDB file" border='0'></a> | 
|---|
| 636 |  | 
|---|
| 637 | </td> | 
|---|
| 638 | </tr> | 
|---|
| 639 | </tbody> | 
|---|
| 640 | </table> | 
|---|
| 641 | <table cellpadding="5" cellspacing="5" border="0"  style="text-align: left; width: 100%;"> | 
|---|
| 642 | <tbody> | 
|---|
| 643 | <tr class="se_back1"> | 
|---|
| 644 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 645 | Title | 
|---|
| 646 | </td> | 
|---|
| 647 | <td width="85%" valign="top" class="se_datalarge1"> | 
|---|
| 648 |  | 
|---|
| 649 | COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE | 
|---|
| 650 |  | 
|---|
| 651 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureTitle"> | 
|---|
| 652 | </td> | 
|---|
| 653 | </tr> | 
|---|
| 654 | <tr class="se_back2"> | 
|---|
| 655 | <td width="15%" align="right" class="se_item"> | 
|---|
| 656 | Authors | 
|---|
| 657 | </td> | 
|---|
| 658 | <td width="85%" > | 
|---|
| 659 | <form action="/pdb/search/smartSubquery.do" method="get" name="queryStructureAuthorForm"> | 
|---|
| 660 | <input type="hidden" name="authName" value=""> | 
|---|
| 661 | <input type="hidden" name="smartSearchSubtype" value="AuthorQuery"> | 
|---|
| 662 | <input type="hidden" name="display" value="true"> | 
|---|
| 663 | <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Feinberg, H.');">Feinberg, H.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Changela, A.');">Changela, A.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Mondragon, A.');">Mondragon, A.</a> | 
|---|
| 664 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureExperimentAuthors"> | 
|---|
| 665 | </form> | 
|---|
| 666 | </td> | 
|---|
| 667 | </tr> | 
|---|
| 668 | <tr class="se_back1"> | 
|---|
| 669 | <td width="15%" align="right" class="se_item"> | 
|---|
| 670 | <form action="/pdb/search/smartSubquery.do" method="get" name="queryCitationAuthorForm"> | 
|---|
| 671 | <input type="hidden" name="citation_author.name.value" value=""> | 
|---|
| 672 | <input type="hidden" name="citation_author.name.comparator" value="contains"> | 
|---|
| 673 | <input type="hidden" name="citation_author.citation_id.value" value=""> | 
|---|
| 674 | <input type="hidden" name="smartSearchSubtype" value="CitationAuthorQuery"> | 
|---|
| 675 | <input type="hidden" name="display" value="true"> | 
|---|
| 676 | </form> | 
|---|
| 677 | Primary Citation   | 
|---|
| 678 | </td> | 
|---|
| 679 | <td width="85%" class="se_datasmall1"> | 
|---|
| 680 | <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Feinberg, H.', true);">Feinberg, H.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Changela, A.', true);">Changela, A.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Mondragon, A.', true);">Mondragon, A.</a> | 
|---|
| 681 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationArticleAuthors"> | 
|---|
| 682 |  | 
|---|
| 683 | Protein-nucleotide interactions in E. coli DNA topoisomerase I. | 
|---|
| 684 |  | 
|---|
| 685 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationArticleTitle"> | 
|---|
| 686 |  | 
|---|
| 687 | <span class="se_journal">Nat.Struct.Biol.</span> | 
|---|
| 688 |  | 
|---|
| 689 |  | 
|---|
| 690 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalName"> | 
|---|
| 691 |  | 
|---|
| 692 | <span class="se_journal">v6</span> | 
|---|
| 693 |  | 
|---|
| 694 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalVolume"> | 
|---|
| 695 |  | 
|---|
| 696 | <span class="se_journal">pp.961-968</span> | 
|---|
| 697 |  | 
|---|
| 698 | , | 
|---|
| 699 | <span class="se_journal">1999</span> | 
|---|
| 700 |  | 
|---|
| 701 |  | 
|---|
| 702 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalYear"> | 
|---|
| 703 |  | 
|---|
| 704 |  | 
|---|
| 705 | <br> | 
|---|
| 706 | [ <a class="se_datalarge" href="/pdb/explore/pubmed.do?structureId=1CY0" name="Abstract" ALT="View Searchable PubMed Abstract" TITLE="View Searchable PubMed Abstract">Abstract</a> ]    | 
|---|
| 707 | <a class="se_datalarge" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=10504732" target="resource_window"> | 
|---|
| 708 | <img src="/pdbstatic/explorer/images/abstract_icon.gif" BORDER="0" ALT="View PubMed Abstract at NCBI" TITLE="View PubMed Abstract at NCBI"> | 
|---|
| 709 |  | 
|---|
| 710 | </td> | 
|---|
| 711 | </tr> | 
|---|
| 712 | <tr class="se_back2"> | 
|---|
| 713 | <td width="15%" align="right" class="se_item"> | 
|---|
| 714 | History | 
|---|
| 715 | </td> | 
|---|
| 716 | <td width="85%" class="se_datalarge2"> | 
|---|
| 717 | <span class="se_subitem">Deposition  </span> | 
|---|
| 718 | 1999-08-31 | 
|---|
| 719 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="DepositionDate"> | 
|---|
| 720 |  | 
|---|
| 721 | <span class="se_subitem"> Release </span> | 
|---|
| 722 | 2000-03-08 | 
|---|
| 723 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="ReleaseDate"> | 
|---|
| 724 |  | 
|---|
| 725 | </td> | 
|---|
| 726 | </tr> | 
|---|
| 727 | <tr class="se_back1"> | 
|---|
| 728 | <td width="15%" align="right" class="se_item"> | 
|---|
| 729 | Experimental Method | 
|---|
| 730 | </td> | 
|---|
| 731 | <td width="85%" class="se_datalarge1"> | 
|---|
| 732 | <span class="se_subitem">Type  </span> | 
|---|
| 733 | X-RAY DIFFRACTION | 
|---|
| 734 | <img src="/pdbstatic/explorer/images/spacer.gif" alt=""> | 
|---|
| 735 | <span class="se_subitem">Data</span> | 
|---|
| 736 |  | 
|---|
| 737 |  | 
|---|
| 738 | <a class="se_datasmall1">N/A</a> | 
|---|
| 739 |  | 
|---|
| 740 |  | 
|---|
| 741 |  | 
|---|
| 742 | </td></tr> | 
|---|
| 743 |  | 
|---|
| 744 |  | 
|---|
| 745 | <tr class="se_back2"> | 
|---|
| 746 | <td width="15%" align="right" class="se_item"> | 
|---|
| 747 | Parameters   | 
|---|
| 748 | </td> | 
|---|
| 749 | <td width="85%" class="se_datalarge2"> | 
|---|
| 750 |  | 
|---|
| 751 | <form action="/pdb/search/smartSubquery.do" method="get" name="sgQueryForm"> | 
|---|
| 752 | <input type="hidden" name="smartSearchSubtype" value="SpaceGroupQuery"> | 
|---|
| 753 | <input type="hidden" name="display" value="true"> | 
|---|
| 754 | <input type="hidden" name="symmetry.space_group_name_H-M.value" value=""> | 
|---|
| 755 | <input type="hidden" name="symmetry.space_group_name_H-M.comparator" value="="> | 
|---|
| 756 |  | 
|---|
| 757 | <table border="0" cellpadding="1" cellspacing="1" width="100%"> | 
|---|
| 758 | <tr class="se_subitem2"> | 
|---|
| 759 | <td width="20%"> | 
|---|
| 760 | Resolution[Å] | 
|---|
| 761 | <a href='/pdb/statistics/histogram.do?mdcat=refine&mditem=ls_d_res_high&minLabel=0&maxLabel=5&numOfbars=10'> | 
|---|
| 762 | <img src='/pdbstatic/images/histogram16x16.jpg' border=0 title='View a histogram of Resolution' alt='View a histogram of Resolution'> | 
|---|
| 763 | </a> | 
|---|
| 764 | </td> | 
|---|
| 765 | <td width="20%"> | 
|---|
| 766 | R-Value | 
|---|
| 767 | </td> | 
|---|
| 768 | <td width="20%"> | 
|---|
| 769 | R-Free | 
|---|
| 770 | <td width="25%"> | 
|---|
| 771 | Space Group | 
|---|
| 772 | </td> | 
|---|
| 773 | </tr> | 
|---|
| 774 | <tr class="se_subitem2"> | 
|---|
| 775 | <td width="20%" class="se_datalarge2"> | 
|---|
| 776 | 2.45 | 
|---|
| 777 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="Resolution"> | 
|---|
| 778 | </td> | 
|---|
| 779 | <td width="20%" align="left" class="se_datalarge2"> | 
|---|
| 780 | 0.220 | 
|---|
| 781 | (obs.) | 
|---|
| 782 | </td> | 
|---|
| 783 | <td width="20%" align="left" class="se_datalarge2"> | 
|---|
| 784 | 0.274 | 
|---|
| 785 |  | 
|---|
| 786 | </td> | 
|---|
| 787 | <td width="25%" class="se_datalarge2"> | 
|---|
| 788 |  | 
|---|
| 789 | <a class="se_datasmall" onclick="searchSpaceGroup('P 21 21 21');" onmouseover="this.className='se_datasmallHover'" onmouseout="this.className='se_datasmall'"> | 
|---|
| 790 | P 2<sub>1</sub> 2<sub>1</sub> 2<sub>1</sub> | 
|---|
| 791 | </a> | 
|---|
| 792 |  | 
|---|
| 793 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="SpaceGroup"> | 
|---|
| 794 | </td> | 
|---|
| 795 | </tr> | 
|---|
| 796 | </table> | 
|---|
| 797 | </form> | 
|---|
| 798 | </td> | 
|---|
| 799 | </tr> | 
|---|
| 800 | <tr class="se_back1"> | 
|---|
| 801 | <td width="15%" align="right" class="se_item"> | 
|---|
| 802 | Unit Cell   | 
|---|
| 803 | </td> | 
|---|
| 804 | <td width="85%" class="se_datalarge1" valign="top"> | 
|---|
| 805 | <table border="0" cellpadding="1" cellspacing="1"  width="100%"> | 
|---|
| 806 | <tr class="se_subitem1"> | 
|---|
| 807 | <td width="20%"> | 
|---|
| 808 | <span class="se_unitcellitem">Length [Å]</span> | 
|---|
| 809 | </td> | 
|---|
| 810 | <td width="13%"> | 
|---|
| 811 | a | 
|---|
| 812 | </td> | 
|---|
| 813 | <td width="13%" > | 
|---|
| 814 |  | 
|---|
| 815 | <span class="se_datasmall1">63.04</span> | 
|---|
| 816 |  | 
|---|
| 817 | </td> | 
|---|
| 818 | <td width="13%" > | 
|---|
| 819 | b | 
|---|
| 820 | </td> | 
|---|
| 821 | <td width="13%"> | 
|---|
| 822 |  | 
|---|
| 823 | <span class="se_datasmall1">73.31</span> | 
|---|
| 824 |  | 
|---|
| 825 | </td> | 
|---|
| 826 | <td width="13%" > | 
|---|
| 827 | c | 
|---|
| 828 | </td> | 
|---|
| 829 | <td width="15%" > | 
|---|
| 830 |  | 
|---|
| 831 | <span class="se_datasmall1">134.46</span> | 
|---|
| 832 |  | 
|---|
| 833 | </td> | 
|---|
| 834 | </tr> | 
|---|
| 835 | <tr class="se_subitem1"> | 
|---|
| 836 | <td width="20%"> | 
|---|
| 837 | <span class="se_unitcellitem">Angles [°]</span> | 
|---|
| 838 | </td> | 
|---|
| 839 | <td width="13%" > | 
|---|
| 840 | alpha | 
|---|
| 841 | </td> | 
|---|
| 842 | <td width="13%" > | 
|---|
| 843 |  | 
|---|
| 844 | <span class="se_datasmall1">90.00</span>  | 
|---|
| 845 |  | 
|---|
| 846 | </td> | 
|---|
| 847 | <td width="13%"> | 
|---|
| 848 | beta | 
|---|
| 849 | </td> | 
|---|
| 850 | <td width="13%" > | 
|---|
| 851 |  | 
|---|
| 852 | <span class="se_datasmall1">90.00</span>  | 
|---|
| 853 |  | 
|---|
| 854 | </td> | 
|---|
| 855 | <td width="13%" > | 
|---|
| 856 | gamma | 
|---|
| 857 | </td> | 
|---|
| 858 | <td width="15%" > | 
|---|
| 859 |  | 
|---|
| 860 | <span class="se_datasmall1">90.00</span>  | 
|---|
| 861 |  | 
|---|
| 862 | </td> | 
|---|
| 863 | </tr> | 
|---|
| 864 | </table> | 
|---|
| 865 | </td> | 
|---|
| 866 | </tr> | 
|---|
| 867 |  | 
|---|
| 868 |  | 
|---|
| 869 | <tr class="se_back2"> | 
|---|
| 870 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 871 | Molecular Description  Asymmetric Unit | 
|---|
| 872 | </td> | 
|---|
| 873 | <td width="85%" class="se_datalarge2" valign="top"> | 
|---|
| 874 |  | 
|---|
| 875 | <form action="/pdb/search/smartSubquery.do" method="get" name="ecQueryForm"> | 
|---|
| 876 | <input type="hidden" name="smartSearchSubtype" value="EnzymeClassificationQuery"> | 
|---|
| 877 | <input type="hidden" name="display" value="true"> | 
|---|
| 878 | <input type="hidden" name="entity.pdbx_ec.value" value=""> | 
|---|
| 879 | <input type="hidden" name="entity.pdbx_ec.comparator" value="="> | 
|---|
| 880 |  | 
|---|
| 881 |  | 
|---|
| 882 |  | 
|---|
| 883 |  | 
|---|
| 884 | <span class="se_subitem"><br>Polymer:</span> 1   | 
|---|
| 885 | <span class="se_subitem">Molecule:</span> DNA TOPOISOMERASE I   | 
|---|
| 886 | <span class="se_subitem">Fragment:</span> 67 KDA N-TERMINAL FRAGMENT OF E.COLI TOPOISOMERASE I   | 
|---|
| 887 | <span class="se_subitem">Chains:</span> A   | 
|---|
| 888 | <span class="se_subitem">EC no.:</span> <a class="se_datasmall" onclick="searchEc('5.99.1.2');" onmouseover="this.className='se_datasmallHover'" onmouseout="this.className='se_datasmall'">5.99.1.2</a> <a class="se_datalarge" href="http://www.chem.qmul.ac.uk/iubmb/enzyme/EC5/99/1/2.html" target="resource_window"><img src="/pdbstatic/explorer/images/iubmb_icon.gif" BORDER="0" ALT="Go to IUBMB EC entry" TITLE="Go to IUBMB EC entry"></a>  | 
|---|
| 889 |   | 
|---|
| 890 | </form> | 
|---|
| 891 |  | 
|---|
| 892 |  | 
|---|
| 893 | <form action="/pdb/search/smartSubquery.do" method="get" name="queryKeywordsForm"> | 
|---|
| 894 | <input type="hidden" name="smartSearchSubtype" value="StructureKeywordsQuery"> | 
|---|
| 895 | <input type="hidden" name="display" value="true"> | 
|---|
| 896 | <input type="hidden" name="struct_keywords.pdbx_keywords.value" value=""> | 
|---|
| 897 | <input type="hidden" name="struct_keywords.pdbx_keywords.comparator" value="startswith"> | 
|---|
| 898 | </form> | 
|---|
| 899 |  | 
|---|
| 900 |  | 
|---|
| 901 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="Compound"> | 
|---|
| 902 | </td> | 
|---|
| 903 | </tr> | 
|---|
| 904 | <tr class="se_back1"> | 
|---|
| 905 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 906 | Classification | 
|---|
| 907 | </td> | 
|---|
| 908 | <td width="40%" class="se_datalarge1"> | 
|---|
| 909 |  | 
|---|
| 910 | <span class="qrb_value"> | 
|---|
| 911 | <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchPdbxKeyword('ISOMERASE');"> | 
|---|
| 912 | Isomerase | 
|---|
| 913 | </a> | 
|---|
| 914 | </span> | 
|---|
| 915 |  | 
|---|
| 916 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureSummary"> | 
|---|
| 917 |  | 
|---|
| 918 | </td> | 
|---|
| 919 | </tr> | 
|---|
| 920 | </tbody> | 
|---|
| 921 | </table> | 
|---|
| 922 | </td> | 
|---|
| 923 | <td style="vertical-align: top; text-align: right; width: 250px;"> | 
|---|
| 924 |  | 
|---|
| 925 |  | 
|---|
| 926 |  | 
|---|
| 927 |  | 
|---|
| 928 |  | 
|---|
| 929 |  | 
|---|
| 930 |  | 
|---|
| 931 |  | 
|---|
| 932 |  | 
|---|
| 933 |  | 
|---|
| 934 |  | 
|---|
| 935 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 936 |  | 
|---|
| 937 | var isImage = "bio"; | 
|---|
| 938 | function switchStructureImage() | 
|---|
| 939 | { | 
|---|
| 940 | if (isImage == "bio") { | 
|---|
| 941 | document.switchImageForm.structureImageButton.value = "Asymmetric Unit"; | 
|---|
| 942 | document.switchImageForm.structureImage.src = '/pdb/images/1cy0_asym_r_250.jpg'; | 
|---|
| 943 | isImage = "asym"; | 
|---|
| 944 | } | 
|---|
| 945 | else { | 
|---|
| 946 | document.switchImageForm.structureImageButton.value = "Biological Molecule"; | 
|---|
| 947 |  | 
|---|
| 948 | document.switchImageForm.structureImage.src = '/pdb/images/1cy0_bio_r_250.jpg'; | 
|---|
| 949 | isImage = "bio"; | 
|---|
| 950 | } | 
|---|
| 951 | } | 
|---|
| 952 | </script> | 
|---|
| 953 |  | 
|---|
| 954 |  | 
|---|
| 955 |  | 
|---|
| 956 | <form name="switchImageForm" action=""> | 
|---|
| 957 |  | 
|---|
| 958 |  | 
|---|
| 959 | <table border="0" cellpadding="0" cellspacing="0" width="256"> | 
|---|
| 960 | <tr class="homedark"> | 
|---|
| 961 | <td class="putih4"> Images and Visualization</td> | 
|---|
| 962 | <td align="right" valign="top"><img | 
|---|
| 963 | src="/pdbstatic/home/tablecorner.gif" alt="" border="0"></td> | 
|---|
| 964 | </tr> | 
|---|
| 965 | <tr> | 
|---|
| 966 | <td colspan="2"> | 
|---|
| 967 | <table border="0" cellpadding="1" cellspacing="0" width="100%" | 
|---|
| 968 | class="homedark"> | 
|---|
| 969 | <tr> | 
|---|
| 970 | <td> | 
|---|
| 971 | <table border="0" cellpadding="1" cellspacing="0" width="100%" | 
|---|
| 972 | class="homewhite"> | 
|---|
| 973 |  | 
|---|
| 974 |  | 
|---|
| 975 |  | 
|---|
| 976 |  | 
|---|
| 977 |  | 
|---|
| 978 |  | 
|---|
| 979 | <tr> | 
|---|
| 980 | <td align="center"><font size="2" face="Arial, Arial, Helvetica">Biological | 
|---|
| 981 | Molecule / Asymmetric Unit</font></td> | 
|---|
| 982 | </tr> | 
|---|
| 983 | <tr> | 
|---|
| 984 | <td align="center"><img id="structureImage" name="structureImage" | 
|---|
| 985 | src="/pdb/images/1cy0_asym_r_250.jpg" border="0" | 
|---|
| 986 | alt="Biological Molecule / Asymmetric Unit Image for 1CY0"> | 
|---|
| 987 | </td> | 
|---|
| 988 | </tr> | 
|---|
| 989 |  | 
|---|
| 990 | <tr> | 
|---|
| 991 | <td align="center" class="it_item"> | 
|---|
| 992 | <table> | 
|---|
| 993 | <tr> | 
|---|
| 994 | <td class="it_item" colspan="4" align="center">Display Options</td> | 
|---|
| 995 | </tr> | 
|---|
| 996 | <tr> | 
|---|
| 997 | <td align="center"><a class="imagetable" | 
|---|
| 998 | href="/pdb/static.do?p=explorer/viewers/king.jsp" | 
|---|
| 999 | title="KiNG requires Java">KiNG</a></td> | 
|---|
| 1000 | </tr> | 
|---|
| 1001 | <tr> | 
|---|
| 1002 | <td align="center"><a class="imagetable" | 
|---|
| 1003 | href="/pdb/static.do?p=explorer/viewers/jmol.jsp" | 
|---|
| 1004 | title="Jmol requires Java">Jmol</a></td> | 
|---|
| 1005 | </tr> | 
|---|
| 1006 | <tr> | 
|---|
| 1007 | <td align="center"><a class="imagetable" | 
|---|
| 1008 | href="/pdb/static.do?p=explorer/viewers/webmol.jsp" | 
|---|
| 1009 | title="WebMol requires Java">WebMol</a></td> | 
|---|
| 1010 | </tr> | 
|---|
| 1011 | <tr> | 
|---|
| 1012 | <td align="center"><a class="imagetable" | 
|---|
| 1013 | href="/pdb/Viewers/ProteinWorkshop/protein_workshop_launch.jsp" | 
|---|
| 1014 | title="ProteinWorkshop requires Java">Protein Workshop</a></td> | 
|---|
| 1015 | </tr> | 
|---|
| 1016 | <tr><td align="center"><a class="imagetable" href="/pdb/static.do?p=Viewers/QuickPDB/quickPDBApplet.jsp" title="QuickPDB requires Java">QuickPDB</a></td></tr> | 
|---|
| 1017 | <tr> | 
|---|
| 1018 | <td align="center"><a class="imagetable" | 
|---|
| 1019 | href="/pdb/explore/images.do?structureId=1CY0">All | 
|---|
| 1020 | Images</a></td> | 
|---|
| 1021 | </tr> | 
|---|
| 1022 |  | 
|---|
| 1023 |  | 
|---|
| 1024 |  | 
|---|
| 1025 |  | 
|---|
| 1026 |  | 
|---|
| 1027 |  | 
|---|
| 1028 |  | 
|---|
| 1029 |  | 
|---|
| 1030 |  | 
|---|
| 1031 |  | 
|---|
| 1032 | </table> | 
|---|
| 1033 | </td> | 
|---|
| 1034 | </tr> | 
|---|
| 1035 |  | 
|---|
| 1036 |  | 
|---|
| 1037 | </table> | 
|---|
| 1038 | </td> | 
|---|
| 1039 |  | 
|---|
| 1040 | </tr> | 
|---|
| 1041 | </table> | 
|---|
| 1042 | </td> | 
|---|
| 1043 | </tr> | 
|---|
| 1044 | </table> | 
|---|
| 1045 |  | 
|---|
| 1046 | </form> | 
|---|
| 1047 |  | 
|---|
| 1048 | </td> | 
|---|
| 1049 | </tr> | 
|---|
| 1050 | </tbody> | 
|---|
| 1051 | </table> | 
|---|
| 1052 |  | 
|---|
| 1053 |  | 
|---|
| 1054 | <table border="0" cellpadding="4" cellspacing="4" width="100%"> | 
|---|
| 1055 | <tr class="se_back2"> | 
|---|
| 1056 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 1057 | Source | 
|---|
| 1058 | <form action="/pdb/search/smartSubquery.do" method="get" name="srcQueryForm"> | 
|---|
| 1059 |  | 
|---|
| 1060 | <input type="hidden" name="smartSearchSubtype" value="CifFieldsQuery"> | 
|---|
| 1061 | <input type="hidden" name="entity_src_nat.pdbx_organism_scientific.value" value=""> | 
|---|
| 1062 | <input type="hidden" name="entity_src_nat.common_name.value" value=""> | 
|---|
| 1063 | <input type="hidden" name="entity_src_gen.pdbx_gene_src_scientific_name.value" value=""> | 
|---|
| 1064 | <input type="hidden" name="entity_src_gen.gene_src_common_name.value" value=""> | 
|---|
| 1065 | </form> | 
|---|
| 1066 | </td> | 
|---|
| 1067 | <td width="85%" class="se_datalarge2" valign="top"> | 
|---|
| 1068 |  | 
|---|
| 1069 | <span class="se_subitem">Polymer:</span> | 
|---|
| 1070 |  1    | 
|---|
| 1071 | <span class="se_subitem">Scientific Name:</span> | 
|---|
| 1072 | <span class="qrb_value"> | 
|---|
| 1073 | <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'ESCHERICHIA COLI', '');"> | 
|---|
| 1074 |  Escherichia coli   | 
|---|
| 1075 | </a> | 
|---|
| 1076 | </span> | 
|---|
| 1077 | <a class="se_datalarge" href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=562" target="resource_window"><img src="/pdbstatic/explorer/images/taxonomy_icon.gif" BORDER="0" ALT="Go to NCBI Taxonomy entry" TITLE="Go to NCBI Taxonomy entry"></a> | 
|---|
| 1078 |  | 
|---|
| 1079 | <span class="se_subitem">Common Name:</span> | 
|---|
| 1080 | <span class="qrb_value"> | 
|---|
| 1081 | <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', '', 'BACTERIA');"> | 
|---|
| 1082 |  Bacteria   | 
|---|
| 1083 | </a> | 
|---|
| 1084 | </span> | 
|---|
| 1085 |  | 
|---|
| 1086 | <span class="se_subitem">Expression system:</span> | 
|---|
| 1087 | <span class="qrb_value"> | 
|---|
| 1088 | <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'ESCHERICHIA COLI', '');"> | 
|---|
| 1089 |  Escherichia coli   | 
|---|
| 1090 | </a> | 
|---|
| 1091 | </span> | 
|---|
| 1092 |  | 
|---|
| 1093 |  | 
|---|
| 1094 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="Source"> | 
|---|
| 1095 | </td> | 
|---|
| 1096 | </tr> | 
|---|
| 1097 |  | 
|---|
| 1098 | <tr class="se_back1"> | 
|---|
| 1099 | <td width="15%" align="right" class="se_item"> | 
|---|
| 1100 | Related PDB Entries | 
|---|
| 1101 | </td> | 
|---|
| 1102 | <td width="85%" class="se_datalarge1"> | 
|---|
| 1103 | <table border="0" cellpadding="1" cellspacing="1" width="100%"> | 
|---|
| 1104 | <tr> | 
|---|
| 1105 | <td width="20%"> | 
|---|
| 1106 | <span class="se_subitem">Id</span> | 
|---|
| 1107 | </td> | 
|---|
| 1108 | <td width="80%"> | 
|---|
| 1109 | <span class="se_subitem">Details</span> | 
|---|
| 1110 | </td> | 
|---|
| 1111 | </tr> | 
|---|
| 1112 |  | 
|---|
| 1113 | <tr> | 
|---|
| 1114 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1115 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CYY" >1CYY</a>  | 
|---|
| 1116 | </td> | 
|---|
| 1117 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1118 | Crystal structure of the 30 kDa fragment of E. coli DNA topoisomerase I. Hexagonal form  | 
|---|
| 1119 | </td> | 
|---|
| 1120 | </tr> | 
|---|
| 1121 |  | 
|---|
| 1122 | <tr> | 
|---|
| 1123 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1124 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY9" >1CY9</a>  | 
|---|
| 1125 | </td> | 
|---|
| 1126 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1127 | Crystal structure of the 30 kDa fragment of E. coli DNA topoisomerase I. Monoclinic form  | 
|---|
| 1128 | </td> | 
|---|
| 1129 | </tr> | 
|---|
| 1130 |  | 
|---|
| 1131 | <tr> | 
|---|
| 1132 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1133 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY8" >1CY8</a>  | 
|---|
| 1134 | </td> | 
|---|
| 1135 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1136 | Complex of E.coli DNA topoisomerase I with 5'-thymidine monophosphate and 3'-thymidine monophosphate  | 
|---|
| 1137 | </td> | 
|---|
| 1138 | </tr> | 
|---|
| 1139 |  | 
|---|
| 1140 | <tr> | 
|---|
| 1141 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1142 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY7" >1CY7</a>  | 
|---|
| 1143 | </td> | 
|---|
| 1144 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1145 | Complex of E.coli DNA topoisomerase I with 5'-thymidine monophosphate  | 
|---|
| 1146 | </td> | 
|---|
| 1147 | </tr> | 
|---|
| 1148 |  | 
|---|
| 1149 | <tr> | 
|---|
| 1150 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1151 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY6" >1CY6</a>  | 
|---|
| 1152 | </td> | 
|---|
| 1153 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1154 | Complex of E.coli DNA topoisomerase I with 3'-thymidine monophosphate  | 
|---|
| 1155 | </td> | 
|---|
| 1156 | </tr> | 
|---|
| 1157 |  | 
|---|
| 1158 | <tr> | 
|---|
| 1159 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1160 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY4" >1CY4</a>  | 
|---|
| 1161 | </td> | 
|---|
| 1162 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1163 | Complex of E.coli DNA topoisomerase I with 5'pTpTpTp3'  | 
|---|
| 1164 | </td> | 
|---|
| 1165 | </tr> | 
|---|
| 1166 |  | 
|---|
| 1167 | <tr> | 
|---|
| 1168 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1169 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY2" >1CY2</a>  | 
|---|
| 1170 | </td> | 
|---|
| 1171 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1172 | Complex of E.coli DNA topoisomerase I with TpTpTp3'  | 
|---|
| 1173 | </td> | 
|---|
| 1174 | </tr> | 
|---|
| 1175 |  | 
|---|
| 1176 | <tr> | 
|---|
| 1177 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1178 | <a class="se_datalarge" href="/pdb/explore.do?structureId=1CY1" >1CY1</a>  | 
|---|
| 1179 | </td> | 
|---|
| 1180 | <td width="65%" class="se_datalarge1"> | 
|---|
| 1181 | COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 5'pTpTpT  | 
|---|
| 1182 | </td> | 
|---|
| 1183 | </tr> | 
|---|
| 1184 |  | 
|---|
| 1185 | </table> | 
|---|
| 1186 | </td> | 
|---|
| 1187 | </tr> | 
|---|
| 1188 |  | 
|---|
| 1189 |  | 
|---|
| 1190 |  | 
|---|
| 1191 | <tr class="se_back2"> | 
|---|
| 1192 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 1193 | Chemical Component   | 
|---|
| 1194 | </td> | 
|---|
| 1195 | <td width="85%" valign="top"> | 
|---|
| 1196 | <table border="0" cellpadding="1" cellspacing="1"  width="100%" > | 
|---|
| 1197 | <tr class="se_subitem2"> | 
|---|
| 1198 | <td width="10%"> | 
|---|
| 1199 | Identifier | 
|---|
| 1200 | </td> | 
|---|
| 1201 | <td width="35%"> | 
|---|
| 1202 | Name | 
|---|
| 1203 | </td> | 
|---|
| 1204 | <td width="25%"> | 
|---|
| 1205 | Formula | 
|---|
| 1206 | </td> | 
|---|
| 1207 | <td width="20%"> | 
|---|
| 1208 | Drug Similarity | 
|---|
| 1209 | </td> | 
|---|
| 1210 | <td width="20%"> | 
|---|
| 1211 | Ligand Structure | 
|---|
| 1212 | </td> | 
|---|
| 1213 |  | 
|---|
| 1214 | <td width="20%"> | 
|---|
| 1215 | Ligand Interaction | 
|---|
| 1216 | </td> | 
|---|
| 1217 |  | 
|---|
| 1218 | <td> | 
|---|
| 1219 | <form action="/pdb/search/smartSubquery.do" method="get" name="ligandQueryForm"> | 
|---|
| 1220 | <input type="hidden" name="smartSearchSubtype" value="LigandIdQuery"> | 
|---|
| 1221 | <input type="hidden" name="display" value="true"> | 
|---|
| 1222 | <input type="hidden" name="chem_comp.id.value" value=""> | 
|---|
| 1223 | <input type="hidden" name="chem_comp.id.comparator" value="="> | 
|---|
| 1224 | </form> | 
|---|
| 1225 | </td> | 
|---|
| 1226 | </tr> | 
|---|
| 1227 |  | 
|---|
| 1228 |  | 
|---|
| 1229 | <tr> | 
|---|
| 1230 | <td width="5%" class="se_datalarge2" valign="middle"> | 
|---|
| 1231 | <a class="se_datalarge" onclick="searchLigand('A3P');" onmouseover="this.className='se_datalargeHover'" onmouseout="this.className='se_datalarge'">A3P</a> | 
|---|
| 1232 | <img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="NonPolymerEntities">  | 
|---|
| 1233 | </td> | 
|---|
| 1234 | <td width="30%" class="se_datalarge2"> | 
|---|
| 1235 | ADENOSINE-3'-5'-DIPHOSPHATE  | 
|---|
| 1236 | </td> | 
|---|
| 1237 | <td width="20%" class="se_formula2"> | 
|---|
| 1238 | C<sub>1</sub><sub>0</sub> H<sub>1</sub><sub>5</sub> N<sub>5</sub> O<sub>1</sub><sub>0</sub> P<sub>2</sub>   | 
|---|
| 1239 | </td> | 
|---|
| 1240 | <td width="10%" class="se_datalarge2"> | 
|---|
| 1241 | <a class="se_datasmall" href="http://bioinformatics.charite.de/superligands/drug_similarity.php?hetero=A3P" target=resource_window> | 
|---|
| 1242 | [ View ] | 
|---|
| 1243 | </a> | 
|---|
| 1244 | </td> | 
|---|
| 1245 | <td width="15%" class="se_datalarge2"> | 
|---|
| 1246 | <a class="se_datasmall" href="/pdb/explore/marvin.do?handler=structureExplorer&hetId=A3P&sid=1CY0"> | 
|---|
| 1247 | [ View ] | 
|---|
| 1248 | </a> | 
|---|
| 1249 | </td> | 
|---|
| 1250 |  | 
|---|
| 1251 | <td width="20%" class="se_datalarge2"> | 
|---|
| 1252 | <a class="se_datasmall" href="/pdb/explore/ligand3d.jnlp?hetId=A3P"> | 
|---|
| 1253 | [ View ] | 
|---|
| 1254 | </a> | 
|---|
| 1255 | </td> | 
|---|
| 1256 |  | 
|---|
| 1257 | </tr> | 
|---|
| 1258 |  | 
|---|
| 1259 |  | 
|---|
| 1260 | </table> | 
|---|
| 1261 | </td> | 
|---|
| 1262 | </tr> | 
|---|
| 1263 |  | 
|---|
| 1264 |  | 
|---|
| 1265 |  | 
|---|
| 1266 | <tr class="se_back1"> | 
|---|
| 1267 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 1268 | <span class="external_ref">SCOP Classification <font size="-2">(version 1.69)</font></span> | 
|---|
| 1269 | </td> | 
|---|
| 1270 | <td width="85%" valign="top"> | 
|---|
| 1271 | <table border="0" cellpadding="1" cellspacing="1"  width="100%" > | 
|---|
| 1272 | <tr class="se_subitem1"> | 
|---|
| 1273 | <td width="12%"> | 
|---|
| 1274 | Domain Info | 
|---|
| 1275 | </td> | 
|---|
| 1276 | <td width="13%"> | 
|---|
| 1277 | Class | 
|---|
| 1278 | </td> | 
|---|
| 1279 | <td width="15%"> | 
|---|
| 1280 | Fold | 
|---|
| 1281 | </td> | 
|---|
| 1282 | <td width="15%"> | 
|---|
| 1283 | Superfamily | 
|---|
| 1284 | </td> | 
|---|
| 1285 | <td width="15%"> | 
|---|
| 1286 | Family | 
|---|
| 1287 | </td> | 
|---|
| 1288 | <td width="15%"> | 
|---|
| 1289 | Domain | 
|---|
| 1290 | </td> | 
|---|
| 1291 | <td width="15%"> | 
|---|
| 1292 | Species | 
|---|
| 1293 | </td> | 
|---|
| 1294 | </tr> | 
|---|
| 1295 |  | 
|---|
| 1296 | <tr> | 
|---|
| 1297 | <td width="12%" class="se_datasmall1"> | 
|---|
| 1298 | d1cy0a_ | 
|---|
| 1299 | </td> | 
|---|
| 1300 |  | 
|---|
| 1301 | <td width="13%" class="se_datasmall1"> | 
|---|
| 1302 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56572"> Multi-domain proteins (alpha and beta)</a> | 
|---|
| 1303 | </td> | 
|---|
| 1304 |  | 
|---|
| 1305 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1306 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56711"> Prokaryotic type I DNA topoisomerase</a> | 
|---|
| 1307 | </td> | 
|---|
| 1308 |  | 
|---|
| 1309 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1310 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56712"> Prokaryotic type I DNA topoisomerase</a> | 
|---|
| 1311 | </td> | 
|---|
| 1312 |  | 
|---|
| 1313 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1314 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56713"> Prokaryotic type I DNA topoisomerase</a> | 
|---|
| 1315 | </td> | 
|---|
| 1316 |  | 
|---|
| 1317 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1318 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56714"> DNA topoisomerase I, 67K N-terminal domain</a> | 
|---|
| 1319 | </td> | 
|---|
| 1320 |  | 
|---|
| 1321 | <td width="15%" class="se_datalarge1"> | 
|---|
| 1322 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56715"> Escherichia coli</a> | 
|---|
| 1323 | </td> | 
|---|
| 1324 | </tr> | 
|---|
| 1325 |  | 
|---|
| 1326 | </table> | 
|---|
| 1327 | </td> | 
|---|
| 1328 | </tr> | 
|---|
| 1329 |  | 
|---|
| 1330 |  | 
|---|
| 1331 |  | 
|---|
| 1332 | <tr class="se_back2"> | 
|---|
| 1333 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 1334 | <span class="external_ref">CATH Classification <font size="-2">(version v2.6.0)</font></span> | 
|---|
| 1335 | </td> | 
|---|
| 1336 | <td width="85%" valign="top"> | 
|---|
| 1337 | <table border="0" cellpadding="1" cellspacing="1"  width="100%" > | 
|---|
| 1338 | <tr class="se_subitem2"> | 
|---|
| 1339 | <td width="20%"> | 
|---|
| 1340 | Domain | 
|---|
| 1341 | </td> | 
|---|
| 1342 | <td width="20%"> | 
|---|
| 1343 | Class | 
|---|
| 1344 | </td> | 
|---|
| 1345 | <td width="20%"> | 
|---|
| 1346 | Architecture | 
|---|
| 1347 | </td> | 
|---|
| 1348 | <td width="20%"> | 
|---|
| 1349 | Topology | 
|---|
| 1350 | </td> | 
|---|
| 1351 | <td width="20%"> | 
|---|
| 1352 | Homology | 
|---|
| 1353 | </td> | 
|---|
| 1354 | </tr> | 
|---|
| 1355 |  | 
|---|
| 1356 | <tr> | 
|---|
| 1357 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1358 | 1cy0A1 | 
|---|
| 1359 | </td> | 
|---|
| 1360 |  | 
|---|
| 1361 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1362 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1274">Alpha Beta</a> | 
|---|
| 1363 | </td> | 
|---|
| 1364 |  | 
|---|
| 1365 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1366 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1842">3-Layer(aba) Sandwich</a> | 
|---|
| 1367 | </td> | 
|---|
| 1368 |  | 
|---|
| 1369 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1370 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1978">Rossmann fold</a> | 
|---|
| 1371 | </td> | 
|---|
| 1372 |  | 
|---|
| 1373 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1374 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2009">ISOMERASE</a> | 
|---|
| 1375 | </td> | 
|---|
| 1376 | </tr> | 
|---|
| 1377 |  | 
|---|
| 1378 | <tr> | 
|---|
| 1379 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1380 | 1cy0A2 | 
|---|
| 1381 | </td> | 
|---|
| 1382 |  | 
|---|
| 1383 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1384 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a> | 
|---|
| 1385 | </td> | 
|---|
| 1386 |  | 
|---|
| 1387 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1388 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2">Orthogonal Bundle</a> | 
|---|
| 1389 | </td> | 
|---|
| 1390 |  | 
|---|
| 1391 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1392 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=352">Topoisomerase I; domain 2</a> | 
|---|
| 1393 | </td> | 
|---|
| 1394 |  | 
|---|
| 1395 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1396 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=353">Topoisomerase I, domain 2</a> | 
|---|
| 1397 | </td> | 
|---|
| 1398 | </tr> | 
|---|
| 1399 |  | 
|---|
| 1400 | <tr> | 
|---|
| 1401 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1402 | 1cy0A3 | 
|---|
| 1403 | </td> | 
|---|
| 1404 |  | 
|---|
| 1405 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1406 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=762">Mainly Beta</a> | 
|---|
| 1407 | </td> | 
|---|
| 1408 |  | 
|---|
| 1409 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1410 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1229">Distorted Sandwich</a> | 
|---|
| 1411 | </td> | 
|---|
| 1412 |  | 
|---|
| 1413 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1414 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1248">Topoisomerase I; domain 3</a> | 
|---|
| 1415 | </td> | 
|---|
| 1416 |  | 
|---|
| 1417 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1418 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1249">Topoisomerase I, domain 3</a> | 
|---|
| 1419 | </td> | 
|---|
| 1420 | </tr> | 
|---|
| 1421 |  | 
|---|
| 1422 | <tr> | 
|---|
| 1423 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1424 | 1cy0A4 | 
|---|
| 1425 | </td> | 
|---|
| 1426 |  | 
|---|
| 1427 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1428 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a> | 
|---|
| 1429 | </td> | 
|---|
| 1430 |  | 
|---|
| 1431 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1432 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2">Orthogonal Bundle</a> | 
|---|
| 1433 | </td> | 
|---|
| 1434 |  | 
|---|
| 1435 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1436 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=307">Topoisomerase I; domain 4</a> | 
|---|
| 1437 | </td> | 
|---|
| 1438 |  | 
|---|
| 1439 | <td width="20%" class="se_datasmall2"> | 
|---|
| 1440 | <a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=308">Topoisomerase I, domain 4</a> | 
|---|
| 1441 | </td> | 
|---|
| 1442 | </tr> | 
|---|
| 1443 |  | 
|---|
| 1444 | </table> | 
|---|
| 1445 | </td> | 
|---|
| 1446 | </tr> | 
|---|
| 1447 |  | 
|---|
| 1448 | <tr class="se_back1"> | 
|---|
| 1449 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 1450 | <span class="external_ref">PFAM Classification </span> | 
|---|
| 1451 | </td> | 
|---|
| 1452 | <td width="85%" valign="top"> | 
|---|
| 1453 | <table border="0" cellpadding="1" cellspacing="1"  width="100%" > | 
|---|
| 1454 | <tr class="se_subitem1"> | 
|---|
| 1455 | <td width="5%"> | 
|---|
| 1456 | Chain | 
|---|
| 1457 | </td> | 
|---|
| 1458 | <td width="20%"> | 
|---|
| 1459 | PFAM Accession | 
|---|
| 1460 | </td> | 
|---|
| 1461 | <td width="15%"> | 
|---|
| 1462 | PFAM ID | 
|---|
| 1463 | </td> | 
|---|
| 1464 | <td width="25%"> | 
|---|
| 1465 | Description | 
|---|
| 1466 | </td> | 
|---|
| 1467 | <td width="15%"> | 
|---|
| 1468 | Type | 
|---|
| 1469 | </td> | 
|---|
| 1470 | <td width="20%"> | 
|---|
| 1471 | Clan ID | 
|---|
| 1472 | </tr> | 
|---|
| 1473 |  | 
|---|
| 1474 |  | 
|---|
| 1475 | <tr> | 
|---|
| 1476 | <td width="5%" class="se_datasmall1"> | 
|---|
| 1477 | A | 
|---|
| 1478 | </td> | 
|---|
| 1479 | <td width="20%" class="se_datasmall1"> | 
|---|
| 1480 | <a class="se_datalarge" href="http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01131" target=resource_window>PF01131</a> | 
|---|
| 1481 | </td> | 
|---|
| 1482 | <td width="15%" class="se_datasmall1"> | 
|---|
| 1483 | Topoisom_bac | 
|---|
| 1484 | </td> | 
|---|
| 1485 | <td width="25%" class="se_datasmall1"> | 
|---|
| 1486 | DNA topoisomerase | 
|---|
| 1487 | </td> | 
|---|
| 1488 | <td width="15%" class="se_datasmall1"> | 
|---|
| 1489 | Family | 
|---|
| 1490 | </td> | 
|---|
| 1491 | <td width="20%" class="se_datasmall1" title="Clan Description: n/a"> | 
|---|
| 1492 | n/a</a> | 
|---|
| 1493 | </td> | 
|---|
| 1494 | </tr> | 
|---|
| 1495 |  | 
|---|
| 1496 | <tr> | 
|---|
| 1497 | <td width="5%" class="se_datasmall1"> | 
|---|
| 1498 | A | 
|---|
| 1499 | </td> | 
|---|
| 1500 | <td width="20%" class="se_datasmall1"> | 
|---|
| 1501 | <a class="se_datalarge" href="http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01751" target=resource_window>PF01751</a> | 
|---|
| 1502 | </td> | 
|---|
| 1503 | <td width="15%" class="se_datasmall1"> | 
|---|
| 1504 | Toprim | 
|---|
| 1505 | </td> | 
|---|
| 1506 | <td width="25%" class="se_datasmall1"> | 
|---|
| 1507 | Toprim domain | 
|---|
| 1508 | </td> | 
|---|
| 1509 | <td width="15%" class="se_datasmall1"> | 
|---|
| 1510 | Family | 
|---|
| 1511 | </td> | 
|---|
| 1512 | <td width="20%" class="se_datasmall1" title="Clan Description: n/a"> | 
|---|
| 1513 | n/a</a> | 
|---|
| 1514 | </td> | 
|---|
| 1515 | </tr> | 
|---|
| 1516 |  | 
|---|
| 1517 | </table> | 
|---|
| 1518 | </td> | 
|---|
| 1519 | </tr> | 
|---|
| 1520 |  | 
|---|
| 1521 |  | 
|---|
| 1522 | <tr class="se_back2"> | 
|---|
| 1523 | <td width="15%" align="right" valign="top" class="se_item"> | 
|---|
| 1524 | <span class="external_ref">GO Terms</span> | 
|---|
| 1525 | </td> | 
|---|
| 1526 | <td width="85%" valign="top"> | 
|---|
| 1527 | <table border="0" cellpadding="1" cellspacing="1"  width="100%" > | 
|---|
| 1528 | <tr class="se_subitem1"> | 
|---|
| 1529 | <td width="25%"> | 
|---|
| 1530 | Polymer | 
|---|
| 1531 | </td> | 
|---|
| 1532 | <td width="25%"> | 
|---|
| 1533 | Molecular Function | 
|---|
| 1534 | </td> | 
|---|
| 1535 | <td width="25%"> | 
|---|
| 1536 | Biological Process | 
|---|
| 1537 | </td> | 
|---|
| 1538 | <td width="25%"> | 
|---|
| 1539 | Cellular Component | 
|---|
| 1540 | </td> | 
|---|
| 1541 | </tr> | 
|---|
| 1542 |  | 
|---|
| 1543 |  | 
|---|
| 1544 | <tr> | 
|---|
| 1545 | <td width="25%" class="se_datasmall1"> | 
|---|
| 1546 | DNA TOPOISOMERASE I (1CY0:A) | 
|---|
| 1547 | </td> | 
|---|
| 1548 | <td width="25%" class="se_datasmall1"> | 
|---|
| 1549 | <ul> | 
|---|
| 1550 |  | 
|---|
| 1551 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3676">nucleic acid binding</a> | 
|---|
| 1552 |  | 
|---|
| 1553 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3677">DNA binding</a> | 
|---|
| 1554 |  | 
|---|
| 1555 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3916">DNA topoisomerase activity</a> | 
|---|
| 1556 |  | 
|---|
| 1557 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3917">DNA topoisomerase type I activity</a> | 
|---|
| 1558 |  | 
|---|
| 1559 | </ul> | 
|---|
| 1560 | </td> | 
|---|
| 1561 | <td width="25%" class="se_datasmall1"> | 
|---|
| 1562 | <ul> | 
|---|
| 1563 |  | 
|---|
| 1564 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6265">DNA topological change</a> | 
|---|
| 1565 |  | 
|---|
| 1566 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6268">DNA unwinding during replication</a> | 
|---|
| 1567 |  | 
|---|
| 1568 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6304">DNA modification</a> | 
|---|
| 1569 |  | 
|---|
| 1570 | </ul> | 
|---|
| 1571 | </td> | 
|---|
| 1572 | <td width="25%" class="se_datasmall1"> | 
|---|
| 1573 | <ul> | 
|---|
| 1574 |  | 
|---|
| 1575 | <li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=5&n=5694">chromosome</a> | 
|---|
| 1576 |  | 
|---|
| 1577 | </ul> | 
|---|
| 1578 | </td> | 
|---|
| 1579 | </tr> | 
|---|
| 1580 |  | 
|---|
| 1581 | </table> | 
|---|
| 1582 | </td> | 
|---|
| 1583 | </tr> | 
|---|
| 1584 | <tr> | 
|---|
| 1585 | <td> | 
|---|
| 1586 |  | 
|---|
| 1587 | <FORM NAME="PDFCREATOR" ACTION="/pdb/sepdf" method="post" target="sepdfwin"> | 
|---|
| 1588 | <input type="hidden" name="strId" value="1CY0"> | 
|---|
| 1589 | <input type="hidden" name="strTitle" value="COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE"> | 
|---|
| 1590 | <input type="hidden" name="strAuthors" value="Feinberg, H., Changela, A., Mondragon, A."> | 
|---|
| 1591 | <input type="hidden" name="strPrimaryCitations" value="Feinberg, H., Changela, A., Mondragon, A."> | 
|---|
| 1592 | <input type="hidden" name="strCitationTitle" value="Protein-nucleotide interactions in E. coli DNA topoisomerase I."> | 
|---|
| 1593 | <input type="hidden" name="strJournalAbbrev" value="Nat.Struct.Biol."> | 
|---|
| 1594 | <input type="hidden" name="strJounralVolume" value="v6"> | 
|---|
| 1595 | <input type="hidden" name="strJournalPage" value="961-968"> | 
|---|
| 1596 | <input type="hidden" name="strJournalYear" value="1999"> | 
|---|
| 1597 | <input type="hidden" name="strDeposition" value="1999-08-31"> | 
|---|
| 1598 | <input type="hidden" name="strRelease" value="2000-03-08"> | 
|---|
| 1599 | <input type="hidden" name="strExpMethod" value="X-RAY DIFFRACTION"> | 
|---|
| 1600 | <input type="hidden" name="strResolution" value="2.450000047683716"> | 
|---|
| 1601 | <input type="hidden" name="strRValue" value="0.2199999988079071"> | 
|---|
| 1602 | <input type="hidden" name="strRValueType" value="(obs.)"> | 
|---|
| 1603 | <input type="hidden" name="strRFree" value="0.27399998903274536"> | 
|---|
| 1604 |  | 
|---|
| 1605 |  | 
|---|
| 1606 | <input type="hidden" name="strSpaceGroup" value="P 21 21 21"> | 
|---|
| 1607 |  | 
|---|
| 1608 |  | 
|---|
| 1609 |  | 
|---|
| 1610 | <input type="hidden" name="strLengthA" value="63.040000915527344"> | 
|---|
| 1611 |  | 
|---|
| 1612 |  | 
|---|
| 1613 |  | 
|---|
| 1614 |  | 
|---|
| 1615 | <input type="hidden" name="strLengthB" value="73.30999755859375"> | 
|---|
| 1616 |  | 
|---|
| 1617 |  | 
|---|
| 1618 |  | 
|---|
| 1619 |  | 
|---|
| 1620 | <input type="hidden" name="strLengthC" value="134.4600067138672"> | 
|---|
| 1621 |  | 
|---|
| 1622 |  | 
|---|
| 1623 |  | 
|---|
| 1624 | <input type="hidden" name="strAngleA" value="90.0"> | 
|---|
| 1625 |  | 
|---|
| 1626 |  | 
|---|
| 1627 |  | 
|---|
| 1628 | <input type="hidden" name="strAngleB" value="90.0"> | 
|---|
| 1629 |  | 
|---|
| 1630 |  | 
|---|
| 1631 |  | 
|---|
| 1632 | <input type="hidden" name="strAngleC" value="90.0"> | 
|---|
| 1633 |  | 
|---|
| 1634 |  | 
|---|
| 1635 |  | 
|---|
| 1636 | <input type="hidden" name="strMolDesc" value=""> | 
|---|
| 1637 | <input type="hidden" name="strKeywords" value="ISOMERASE"> | 
|---|
| 1638 | <input type="hidden" name="strSourceLine" value="Polymer: 1, Scientific Name: ESCHERICHIA COLI | 
|---|
| 1639 | Common Name: BACTERIA     Expression System: ESCHERICHIA COLI"> | 
|---|
| 1640 | <input type="hidden" name="strChemCompIdList" value="A3P,"> | 
|---|
| 1641 | <input type="hidden" name="strChemCompNameList" value="ADENOSINE-3'-5'-DIPHOSPHATE,"> | 
|---|
| 1642 | <input type="hidden" name="strChemCompFormulaList" value="C10 H15 N5 O10 P2,"> | 
|---|
| 1643 | <input type="hidden" name="strChemCompListLen" value="1"> | 
|---|
| 1644 | <input type="hidden" name="strScopFoldDesc" value="Prokaryotic type I DNA topoisomerase"> | 
|---|
| 1645 | <input type="hidden" name="strScopSFDesc" value="Prokaryotic type I DNA topoisomerase"> | 
|---|
| 1646 | <input type="hidden" name="strScopFamDesc" value="Prokaryotic type I DNA topoisomerase"> | 
|---|
| 1647 | <input type="hidden" name="strScopDomDesc" value="DNA topoisomerase I, 67K N-terminal domain"> | 
|---|
| 1648 | <input type="hidden" name="strScopSpeciesDesc" value="Escherichia coli"> | 
|---|
| 1649 | <input type="hidden" name="strCathDomainList" value="1cy0A1,1cy0A2,1cy0A3,1cy0A4,"> | 
|---|
| 1650 | <input type="hidden" name="strCathClassList" value="Alpha Beta,Mainly Alpha,Mainly Beta,Mainly Alpha,"> | 
|---|
| 1651 | <input type="hidden" name="strCathArchitectureList" value="3-Layer(aba) Sandwich,Orthogonal Bundle,Distorted Sandwich,Orthogonal Bundle,"> | 
|---|
| 1652 | <input type="hidden" name="strCathTopologyList" value="Rossmann fold,Topoisomerase I; domain 2,Topoisomerase I; domain 3,Topoisomerase I; domain 4,"> | 
|---|
| 1653 | <input type="hidden" name="strCathHomologyList" value="ISOMERASE,Topoisomerase I, domain 2,Topoisomerase I, domain 3,Topoisomerase I, domain 4,"> | 
|---|
| 1654 | <input type="hidden" name="strCathListLen" value="4"> | 
|---|
| 1655 | <input type="hidden" name="strGoMoleculeList" value="DNA TOPOISOMERASE I*,*"> | 
|---|
| 1656 | <input type="hidden" name="strGoMolecularFunctionList" value="nucleic acid binding,DNA binding,DNA topoisomerase activity,DNA topoisomerase type I activity,||DNA topological change,DNA unwinding during replication,DNA modification,chromosome,"> | 
|---|
| 1657 | <input type="hidden" name="strGoBiologicalProcessList" value="||"> | 
|---|
| 1658 | <input type="hidden" name="strGoCellularComponentList" value="||"> | 
|---|
| 1659 | <input type="hidden" name="strGoListLen" value="1"> | 
|---|
| 1660 |  | 
|---|
| 1661 |  | 
|---|
| 1662 |  | 
|---|
| 1663 |  | 
|---|
| 1664 |  | 
|---|
| 1665 | </form> | 
|---|
| 1666 |  | 
|---|
| 1667 | </td> | 
|---|
| 1668 | </tr> | 
|---|
| 1669 | </table> | 
|---|
| 1670 |  | 
|---|
| 1671 |  | 
|---|
| 1672 | </td> | 
|---|
| 1673 | </tr> | 
|---|
| 1674 | <tr> | 
|---|
| 1675 | <td valign="top" class="maintd"> </td> | 
|---|
| 1676 | </tr> | 
|---|
| 1677 | </table> | 
|---|
| 1678 |  | 
|---|
| 1679 | </td> | 
|---|
| 1680 | </tr> | 
|---|
| 1681 |  | 
|---|
| 1682 |  | 
|---|
| 1683 |  | 
|---|
| 1684 | <tr> | 
|---|
| 1685 | <td colspan="3"> | 
|---|
| 1686 |  | 
|---|
| 1687 |  | 
|---|
| 1688 |  | 
|---|
| 1689 | <table width="100%" border="0" cellpadding="0" cellspacing="0"> | 
|---|
| 1690 | <tr> | 
|---|
| 1691 | <td class="foothomelight"><img src="/pdbstatic/images/spacer.gif" alt="" height="15" border="0"></td> | 
|---|
| 1692 | <td class="foothomelight" colspan="2"></td> | 
|---|
| 1693 | </tr> | 
|---|
| 1694 | <tr> | 
|---|
| 1695 | <td class="foothomedark1" colspan="3"> | 
|---|
| 1696 | <a class="foothomedark1" href="http://home.rcsb.org/" target="_blank"><i>© RCSB Protein Data Bank   </i></a> | 
|---|
| 1697 | </td> | 
|---|
| 1698 | </tr> | 
|---|
| 1699 |  | 
|---|
| 1700 | <tr> | 
|---|
| 1701 | <td colspan="3"><br></td> | 
|---|
| 1702 | </tr> | 
|---|
| 1703 | </table> | 
|---|
| 1704 |  | 
|---|
| 1705 | </td> | 
|---|
| 1706 | </tr> | 
|---|
| 1707 |  | 
|---|
| 1708 | </tbody> | 
|---|
| 1709 | </table> | 
|---|
| 1710 |  | 
|---|
| 1711 | <script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/wz_tooltip.js"></script> | 
|---|
| 1712 | <script type="text/javascript" language=javascript src="/pdbstatic/common/lib/awstats_misc_tracker.js"></script> | 
|---|
| 1713 | <script type="text/javascript" language="JavaScript"> | 
|---|
| 1714 | var htmlHttpLoader = new RemoteFileLoader('htmlHttpLoader'); | 
|---|
| 1715 |  | 
|---|
| 1716 |  | 
|---|
| 1717 | var oldhandler = window.onload; | 
|---|
| 1718 | window.onload = (typeof oldhandler == "function") | 
|---|
| 1719 | ? function() { oldhandler(); initExpandableLists(); } : initExpandableLists; | 
|---|
| 1720 | </script> | 
|---|
| 1721 | </body> | 
|---|
| 1722 | </html> | 
|---|